1Which type of membrane transport moves ions down their electrochemical gradient without using ATP?
Channels and Transporters in Biological system
Easy
A.Primary active transport
B.Endocytosis
C.Secondary active transport
D.Passive transport through channels
Correct Answer: Passive transport through channels
Explanation:
Ion channels allow passive movement of ions down their electrochemical gradient, requiring no direct energy input from ATP.
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2A key structural difference between channels and transporters is that channels typically:
Channels and Transporters in Biological system
Easy
A.Bind ATP for every transport cycle
B.Move only one solute per hour
C.Form a continuous pore across the membrane
D.Require covalent modification to open
Correct Answer: Form a continuous pore across the membrane
Explanation:
Channels create a water-filled pore allowing rapid ion flux, whereas transporters bind and physically carry solutes across.
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3Compared with transporters, ion channels generally allow ion movement that is:
Channels and Transporters in Biological system
Easy
A.Independent of pore size
B.Much slower
C.Always against the gradient
D.Much faster
Correct Answer: Much faster
Explanation:
Channels can conduct up to millions of ions per second, far faster than transporters, which move solutes at a limited cyclic rate.
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4The -ATPase is best classified as a:
Channels and Transporters in Biological system
Easy
A.Primary active transporter (pump)
B.Voltage-gated channel
C.Passive ion channel
D.Symporter driven by gradients
Correct Answer: Primary active transporter (pump)
Explanation:
The -ATPase uses ATP hydrolysis directly to pump ions against their gradients, making it a primary active transporter.
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5A transporter that moves two different solutes in opposite directions is called a(n):
Channels and Transporters in Biological system
Easy
A.Channel
B.Antiporter
C.Symporter
D.Uniporter
Correct Answer: Antiporter
Explanation:
An antiporter (exchanger) transports two solutes in opposite directions across the membrane.
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6Which property allows ion channels to conduct only specific ions?
Channels and Transporters in Biological system
Easy
A.Cytoskeletal anchoring
B.ATP binding affinity
C.Selectivity of the pore
D.Membrane thickness
Correct Answer: Selectivity of the pore
Explanation:
A selectivity filter within the pore discriminates ions based on size and charge, permitting only certain ions to pass.
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7Voltage-gated ion channels open primarily in response to changes in:
Functional Properties of Voltage-Gated Ion Channels
Easy
A.Extracellular pH
B.Membrane potential
C.ATP concentration
D.Ambient temperature
Correct Answer: Membrane potential
Explanation:
Voltage-gated channels contain a voltage sensor that responds to changes in the membrane potential, triggering the channel to open or close.
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8Which region of a voltage-gated channel acts as the voltage sensor?
Functional Properties of Voltage-Gated Ion Channels
Easy
A.The extracellular loop only
B.The ATP-binding domain
C.The S4 transmembrane segment
D.The lipid bilayer core
Correct Answer: The S4 transmembrane segment
Explanation:
The S4 segment carries positively charged residues that move in response to voltage changes, acting as the voltage sensor.
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9The rapid rising phase of a neuronal action potential is caused mainly by the opening of:
Functional Properties of Voltage-Gated Ion Channels
Easy
A.Voltage-gated channels
B.Voltage-gated channels
C.-ATPase pumps
D. leak channels
Correct Answer: Voltage-gated channels
Explanation:
Depolarization opens voltage-gated channels, causing rapid influx that drives the upstroke of the action potential.
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10The state in which a voltage-gated channel cannot reopen immediately even if depolarized is called:
Functional Properties of Voltage-Gated Ion Channels
Easy
A.Leak state
B.Resting closed state
C.Fully open state
D.Inactivated state
Correct Answer: Inactivated state
Explanation:
After opening, many voltage-gated channels enter an inactivated state and must return to rest before they can reopen.
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11Which ion channel is chiefly responsible for repolarizing the neuronal membrane after an action potential?
Functional Properties of Voltage-Gated Ion Channels
Easy
A.Voltage-gated channel
B.Voltage-gated channel
C.Voltage-gated channel
D.Ligand-gated channel
Correct Answer: Voltage-gated channel
Explanation:
Delayed opening of voltage-gated channels allows efflux, repolarizing the membrane toward its resting potential.
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12The term 'gating' in ion channels refers to:
Functional Properties of Voltage-Gated Ion Channels
Easy
A.Pumping ions using ATP
B.Synthesis of channel proteins
C.Opening and closing of the channel
D.Diffusion of lipids in the membrane
Correct Answer: Opening and closing of the channel
Explanation:
Gating is the conformational switching between open and closed states that controls ion flow through the channel.
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13Channelrhodopsins are light-sensitive proteins that function as:
Ion pumping and Ion Channel rhodopsins and their use
Easy
A.ATP-driven ion pumps
B.DNA-binding proteins
C.Voltage sensors only
D.Light-gated ion channels
Correct Answer: Light-gated ion channels
Explanation:
Channelrhodopsins open a cation-conducting pore in response to light, acting as light-gated ion channels.
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14The chromophore that absorbs light in rhodopsins is:
Ion pumping and Ion Channel rhodopsins and their use
Easy
A.Flavin
B.Heme
C.Chlorophyll
D.Retinal
Correct Answer: Retinal
Explanation:
Rhodopsins bind retinal, a vitamin A derivative, which undergoes isomerization upon light absorption to drive channel or pump activity.
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15The technique that uses light to control the activity of neurons expressing rhodopsins is called:
Ion pumping and Ion Channel rhodopsins and their use
Easy
A.Optogenetics
B.Radiography
C.Chromatography
D.Electrophoresis
Correct Answer: Optogenetics
Explanation:
Optogenetics uses light-sensitive proteins such as channelrhodopsins to control neuronal activity with light.
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16Bacteriorhodopsin functions in the cell as a light-driven:
Ion pumping and Ion Channel rhodopsins and their use
Easy
A.Sodium channel
B.Proton pump
C.Glucose transporter
D.Calcium sensor
Correct Answer: Proton pump
Explanation:
Bacteriorhodopsin uses light energy to pump protons () across the membrane, generating a proton gradient.
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17When channelrhodopsin-2 (ChR2) is illuminated with blue light, the expressing neuron typically undergoes:
Ion pumping and Ion Channel rhodopsins and their use
Easy
A.Cell division
B.Depolarization
C.Hyperpolarization
D.No change in potential
Correct Answer: Depolarization
Explanation:
ChR2 conducts cations upon blue-light stimulation, causing depolarization that can trigger neuronal firing.
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18The characteristic internal arrangement of microtubules in a eukaryotic cilium is described as:
Cilia and Flagella: Structure and Movement
Easy
A.9 + 0 arrangement
B.9 + 2 arrangement
C.7 + 2 arrangement
D.2 + 9 arrangement
Correct Answer: 9 + 2 arrangement
Explanation:
The axoneme of a motile cilium has nine outer microtubule doublets surrounding a central pair, the 9 + 2 arrangement.
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19The motor protein that generates movement in cilia and flagella is:
Cilia and Flagella: Structure and Movement
Easy
A.Myosin
B.Dynein
C.Actin
D.Kinesin
Correct Answer: Dynein
Explanation:
Axonemal dynein uses ATP to produce sliding between microtubule doublets, driving the bending motion of cilia and flagella.
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20The bending movement of cilia and flagella results from:
Cilia and Flagella: Structure and Movement
Easy
A.Rotation of the whole cell
B.Osmotic swelling of the axoneme
C.Sliding of microtubule doublets
D.Contraction of actin filaments
Correct Answer: Sliding of microtubule doublets
Explanation:
Dynein-driven sliding of adjacent microtubule doublets, constrained by linking proteins, converts to bending of the axoneme.
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21A researcher observes that a membrane transport process shows saturation kinetics (a maximum rate that cannot be exceeded even at very high substrate concentrations) and can be competitively inhibited. Which transport mechanism does this most likely represent?
Channels and Transporters in Biological system
Medium
A.Carrier-mediated transport (transporter)
B.Bulk-phase endocytosis
C.Simple diffusion through the lipid bilayer
D.Flow through an open ion channel
Correct Answer: Carrier-mediated transport (transporter)
Explanation:
Transporters bind their substrates at specific sites, so they show saturation () and can be competitively inhibited, unlike channels (very high flux, no true saturation) or simple diffusion (linear with concentration).
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22Ion channels typically conduct – ions per second, while transporters move roughly – ions per second. What is the primary structural reason for this large difference in throughput?
Channels and Transporters in Biological system
Medium
A.Transporters have larger pore diameters than channels
B.Channels transport only against the electrochemical gradient
C.Channels are always powered by ATP hydrolysis
D.Channels form a continuous open pore, whereas transporters undergo conformational cycling for each transport event
Correct Answer: Channels form a continuous open pore, whereas transporters undergo conformational cycling for each transport event
Explanation:
Once open, a channel lets ions flow rapidly down their gradient through a continuous pore. Transporters must bind, change conformation, and release for every cycle, which is inherently slower.
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23The -glucose cotransporter (SGLT) in the intestinal epithelium moves glucose into the cell even against its concentration gradient. What powers this uphill glucose movement?
Channels and Transporters in Biological system
Medium
A.Direct hydrolysis of ATP by the transporter
B.The membrane potential acting on glucose charge
C.The inward electrochemical gradient of
D.The outward gradient of
Correct Answer: The inward electrochemical gradient of
Explanation:
SGLT is a secondary active transporter (symporter). It uses the energy stored in the gradient (established by the -ATPase) to drive glucose uphill; glucose itself is uncharged.
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24Which statement best distinguishes primary from secondary active transport?
Channels and Transporters in Biological system
Medium
A.Primary active transport occurs only in mitochondria, secondary only in the plasma membrane
B.Primary active transport is passive, while secondary requires channels
C.Primary active transport uses a chemical energy source directly (e.g., ATP), while secondary uses an ion gradient established by another pump
D.Primary active transport moves ions down their gradient, while secondary moves them up
Correct Answer: Primary active transport uses a chemical energy source directly (e.g., ATP), while secondary uses an ion gradient established by another pump
Explanation:
Primary pumps like the -ATPase couple transport directly to ATP hydrolysis. Secondary transporters harness the stored energy of a preexisting ion gradient.
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25During an action potential, voltage-gated channels inactivate rapidly, but voltage-gated channels do not inactivate as quickly. What is the functional consequence of this timing difference?
Functional Properties of Voltage-Gated Ion Channels
Medium
A.It causes the resting potential to become more positive permanently
B.It prevents the membrane from ever depolarizing
C.It allows to replace as the depolarizing ion
D.It ensures repolarization follows depolarization and helps set the refractory period
Correct Answer: It ensures repolarization follows depolarization and helps set the refractory period
Explanation:
channel inactivation stops the depolarizing current while slower channels remain open to repolarize the cell. channel inactivation also underlies the refractory period.
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26The voltage sensor of a voltage-gated ion channel is located primarily in which region?
Functional Properties of Voltage-Gated Ion Channels
Medium
A.The extracellular selectivity filter
B.The intracellular C-terminal tail
C.The S4 transmembrane segment, which carries positively charged residues
Correct Answer: The S4 transmembrane segment, which carries positively charged residues
Explanation:
The S4 helix contains regularly spaced arginine/lysine residues. Changes in membrane potential move these charges, triggering the conformational change that opens the channel gate.
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27The channel selectivity filter conducts far better than the smaller . What explains this counterintuitive selectivity?
Functional Properties of Voltage-Gated Ion Channels
Medium
A.Carbonyl oxygens in the filter mimic 's hydration shell, but are too far apart to compensate 's dehydration energy
B. carries a higher charge than
C. is too large to physically fit through the pore
D.The filter is lined with positive charges that repel more strongly
Correct Answer: Carbonyl oxygens in the filter mimic 's hydration shell, but are too far apart to compensate 's dehydration energy
Explanation:
The backbone carbonyl oxygens are spaced to coordinate dehydrated optimally. The smaller cannot be coordinated well enough to offset the energy cost of losing its water shell.
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28In a voltage-clamp experiment, a neuron is depolarized and held at a constant positive voltage. The inward current rises then decays to near zero within a few milliseconds despite the maintained depolarization. This decay is due to:
Functional Properties of Voltage-Gated Ion Channels
Medium
A.Depletion of extracellular
B.Closure of the activation gate
C.Fast inactivation of channels
D.Opening of voltage-gated channels
Correct Answer: Fast inactivation of channels
Explanation:
The maintained voltage keeps the activation gate open, so the current decay reflects the inactivation gate (ball-and-chain) blocking the pore, not activation gate closure or ion depletion.
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29Using the Nernst equation, at with and , the equilibrium potential for is approximately:
Functional Properties of Voltage-Gated Ion Channels
Medium
A.
B.
C.
D.
Correct Answer:
Explanation:
. The negative sign reflects being more concentrated inside.
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30A toxin binds the extracellular mouth of voltage-gated channels and physically blocks the pore (like tetrodotoxin). What is the expected effect on an axon's action potential?
Functional Properties of Voltage-Gated Ion Channels
Medium
A.Repolarization is prevented, causing sustained depolarization
B.Action potentials become larger and longer
C.Action potentials are abolished because the depolarizing influx is blocked
D.The resting potential shifts strongly positive
Correct Answer: Action potentials are abolished because the depolarizing influx is blocked
Explanation:
Blocking channels prevents the regenerative influx needed for the upstroke, so action potentials cannot be generated or propagated.
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31Bacteriorhodopsin and channelrhodopsin both use retinal and absorb light, yet they function differently. What is the key functional distinction?
Ion pumping and Ion Channel rhodopsins and their use
Medium
B.Bacteriorhodopsin is a light-driven ion pump, whereas channelrhodopsin is a light-gated ion channel
C.Both are pumps but move ions in opposite directions only
D.Bacteriorhodopsin conducts ions passively, whereas channelrhodopsin actively pumps them
Correct Answer: Bacteriorhodopsin is a light-driven ion pump, whereas channelrhodopsin is a light-gated ion channel
Explanation:
Bacteriorhodopsin actively pumps against a gradient using light energy. Channelrhodopsin opens a passive pore upon illumination, letting cations flow down their gradient.
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32In optogenetics, expressing channelrhodopsin-2 (ChR2) in a neuron and illuminating it with blue light typically causes:
Ion pumping and Ion Channel rhodopsins and their use
Medium
A.Depolarization and firing due to cation (mainly ) influx
B.ATP-driven ejection of
C.Permanent inactivation of voltage-gated channels
D.Hyperpolarization and silencing due to influx
Correct Answer: Depolarization and firing due to cation (mainly ) influx
Explanation:
ChR2 is a nonselective cation channel. Blue light opens it, allowing (and other cations) to enter, depolarizing the neuron and triggering action potentials.
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33To silence neurons optogenetically, researchers often use halorhodopsin. What does halorhodopsin do upon light activation?
Ion pumping and Ion Channel rhodopsins and their use
Medium
A.Opens a channel that triggers firing
B.Hydrolyzes ATP to export
C.Pumps into the cell, hyperpolarizing the membrane
D.Pumps out of the cell, depolarizing it
Correct Answer: Pumps into the cell, hyperpolarizing the membrane
Explanation:
Halorhodopsin is a light-driven inward pump. Adding negative charge inside hyperpolarizes the neuron, inhibiting action potential generation.
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34The -ATPase moves 3 out and 2 in per ATP hydrolyzed. Why is this pump described as electrogenic?
Ion pumping and Ion Channel rhodopsins and their use
Medium
A.It produces a net movement of one positive charge out per cycle, contributing to membrane potential
B.It depends on light rather than ATP
C.It transports only uncharged molecules
D.It moves equal charges in both directions, generating no net current
Correct Answer: It produces a net movement of one positive charge out per cycle, contributing to membrane potential
Explanation:
Exporting 3 while importing 2 removes one net positive charge per cycle, so the pump directly contributes a small hyperpolarizing current.
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35In the photocycle of bacteriorhodopsin, absorption of a photon causes retinal to isomerize. This isomerization is best described as:
Ion pumping and Ion Channel rhodopsins and their use
Medium
A.13-cis to 9-cis, releasing ATP
B.all-trans to 13-cis, which triggers proton transfer steps
C.all-trans to 11-cis, which closes an ion channel
D.11-cis to all-trans, as in vertebrate vision
Correct Answer: all-trans to 13-cis, which triggers proton transfer steps
Explanation:
In bacteriorhodopsin the resting all-trans retinal photoisomerizes to 13-cis, driving conformational changes that move a proton across the membrane. (Vertebrate rhodopsin uses 11-cis to all-trans instead.)
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36The classic axoneme of eukaryotic cilia and flagella has which arrangement of microtubules?
Cilia and Flagella: Structure and Movement
Medium
A.2 outer doublets surrounding 9 central singlets
B.9 outer triplets with no central pair
C.13 protofilaments arranged in a single tube
D.9 outer doublets surrounding 2 central singlets (the "9+2" pattern)
Correct Answer: 9 outer doublets surrounding 2 central singlets (the "9+2" pattern)
Explanation:
Motile cilia and flagella have the 9+2 axoneme: nine peripheral microtubule doublets around a central pair. (Basal bodies and centrioles, by contrast, use a 9+0 triplet arrangement.)
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37Ciliary bending is generated when dynein arms on one doublet walk along the adjacent doublet. Why does this sliding produce bending rather than telescoping apart?
Cilia and Flagella: Structure and Movement
Medium
A.The microtubules are fused end to end and cannot slide
B.Nexin links and basal anchoring resist sliding, converting it into localized bending
C.Dynein pushes the doublets outward radially
D.The central pair physically clamps the doublets in place
Correct Answer: Nexin links and basal anchoring resist sliding, converting it into localized bending
Explanation:
Dynein-driven sliding is constrained by nexin (interdoublet) links and anchoring at the basal body. These constraints convert linear sliding into the characteristic bending of the axoneme.
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38Which motor protein powers the movement of the eukaryotic axoneme, and what is its energy source?
Cilia and Flagella: Structure and Movement
Medium
A.The bacterial flagellar motor, powered by a proton gradient
B.Axonemal dynein, powered by ATP hydrolysis
C.Kinesin, powered by GTP hydrolysis
D.Myosin, powered by ATP hydrolysis
Correct Answer: Axonemal dynein, powered by ATP hydrolysis
Explanation:
Axonemal dynein is the ATP-driven motor that produces microtubule sliding in cilia and flagella. Kinesin/myosin are different cytoskeletal motors, and the proton-driven motor belongs to bacterial (not eukaryotic) flagella.
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39A key difference between bacterial and eukaryotic flagella is the mechanism of movement. The bacterial flagellum moves by:
Cilia and Flagella: Structure and Movement
Medium
A.Contracting actin-myosin filaments
B.Bending via ATP-driven dynein sliding
C.Whip-like beating using a 9+2 axoneme
D.Rotating like a propeller, driven by a proton-motive-force-powered motor
Correct Answer: Rotating like a propeller, driven by a proton-motive-force-powered motor
Explanation:
Bacterial flagella are rigid helical filaments rotated by a rotary motor powered by the transmembrane proton (or ) gradient, unlike the ATP-driven bending of the eukaryotic 9+2 axoneme.
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40In primary ciliary dyskinesia, defective dynein arms impair ciliary beating. Besides respiratory problems, patients may show situs inversus (reversed organ placement). This link suggests that:
Cilia and Flagella: Structure and Movement
Medium
A.Dynein directly transcribes developmental genes
B.Situs inversus is caused by defective 9+0 sensory cilia only
C.Cilia synthesize the proteins that determine organ shape
D.Motile cilia establish left-right body asymmetry during development
Correct Answer: Motile cilia establish left-right body asymmetry during development
Explanation:
Nodal motile cilia generate a directional fluid flow in the embryo that sets up left-right asymmetry. When their dynein-driven motility fails, laterality is randomized, sometimes producing situs inversus.
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41In a Hodgkin-Huxley analysis, the conductance is described as . If a mutation removes the inactivation gate while leaving activation intact, which functional consequence is most directly expected?
Functional Properties of Voltage-Gated Ion Channels
Hard
A.Conversion of the channel into a -selective pore
B.A hyperpolarizing shift in the activation threshold
C.Complete loss of the action potential upstroke
D.Sustained current during a prolonged depolarization instead of a transient spike
Correct Answer: Sustained current during a prolonged depolarization instead of a transient spike
Explanation:
The term represents inactivation. Removing it () leaves activation intact, so the channel opens on depolarization but never inactivates, producing a persistent (non-inactivating) current.
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42The gating charge movement of a voltage sensor produces a measurable gating current that precedes ionic current. Which observation best distinguishes a genuine gating current from a leak or capacitive artifact?
Functional Properties of Voltage-Gated Ion Channels
Hard
A.It persists unchanged when all permeant ions are removed and pore is blocked but grows without bound
B.It reverses sign exactly at the equilibrium potential
C.It scales linearly with voltage at all potentials without saturation
D.It is nonlinear, saturates at extreme voltages, and its time integral (charge) is conserved
Correct Answer: It is nonlinear, saturates at extreme voltages, and its time integral (charge) is conserved
Explanation:
Gating currents arise from finite, movable charges in the sensor; hence they saturate (charge is limited) and the integrated ON charge equals the OFF charge. Linear, unbounded behavior indicates leak/capacitive artifacts.
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43The selectivity filter of voltage-gated channels contains the signature sequence TVGYG. Why can this filter conduct near the diffusion limit yet strongly exclude ?
Functional Properties of Voltage-Gated Ion Channels
Hard
A.The filter is negatively charged and electrostatically repels the smaller ion
B.The filter binds so tightly that it becomes permanently trapped
C. is larger than and cannot physically enter the pore
D.Backbone carbonyl oxygens mimic 's hydration shell geometry, but are too far apart to efficiently coordinate the smaller
Correct Answer: Backbone carbonyl oxygens mimic 's hydration shell geometry, but are too far apart to efficiently coordinate the smaller
Explanation:
Selectivity is a snug-fit / coordination phenomenon: the carbonyl cage precisely replaces hydration, but the smaller cannot be optimally coordinated at the same geometry, making its dehydration energetically unfavorable.
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44A voltage-gated channel shows a Boltzmann activation curve with a slope factor mV. Assuming at ( mV), what is the effective gating valence ?
Functional Properties of Voltage-Gated Ion Channels
Hard
A.
B.
C.
D.
Correct Answer:
Explanation:
. A steeper curve (smaller ) implies more gating charge moving across the field.
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45During the relative refractory period of a neuron, a larger-than-normal stimulus is required to fire an action potential primarily because:
Functional Properties of Voltage-Gated Ion Channels
Hard
A.The membrane capacitance temporarily doubles
B.The -ATPase stops functioning
C.All channels are permanently destroyed
D.Some channels remain inactivated while voltage-gated channels are still open
Correct Answer: Some channels remain inactivated while voltage-gated channels are still open
Explanation:
In the relative refractory period a fraction of channels have recovered while others are still inactivated, and residual conductance hyperpolarizes the cell, so a stronger stimulus is needed to reach threshold.
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46Consider a cell with intracellular mM, extracellular mM, and mV at ( mV). What is the approximate electrochemical driving force on ()?
Channels and Transporters in Biological system
Hard
A. mV (near equilibrium)
B. mV (strong outward drive)
C. mV (moderate outward drive)
D. mV (strong inward drive)
Correct Answer: mV (strong inward drive)
Explanation:
mV. Driving force mV, indicating a strong inward driving force on .
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47Which criterion most fundamentally distinguishes a channel from a transporter (carrier) at the mechanistic level?
Channels and Transporters in Biological system
Hard
A.A channel is always faster because it binds substrate more tightly than a transporter
B.A channel provides a continuous open pore, while a transporter undergoes alternating-access conformational cycling exposing the binding site to one side at a time
C.A channel moves only anions while a transporter moves only cations
D.A channel always consumes ATP while a transporter never does
Correct Answer: A channel provides a continuous open pore, while a transporter undergoes alternating-access conformational cycling exposing the binding site to one side at a time
Explanation:
Channels allow rapid flux (- ions/s) through an aqueous pore open to both sides when gated. Transporters bind substrate and alternate access, giving much lower turnover (-/s).
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48The cotransporter (SGLT) accumulates glucose against its gradient. This is thermodynamically possible because:
Channels and Transporters in Biological system
Hard
A.The transporter creates glucose from metabolically
B.SGLT directly hydrolyzes ATP for each glucose molecule
C.The favorable inward electrochemical gradient is coupled to uphill glucose transport (secondary active transport)
D.Glucose diffuses passively down its own gradient
Correct Answer: The favorable inward electrochemical gradient is coupled to uphill glucose transport (secondary active transport)
Explanation:
SGLT is a secondary active transporter: energy stored in the gradient (maintained by the -ATPase) drives glucose uphill via obligatory coupling, without SGLT itself hydrolyzing ATP.
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49For the -ATPase moving 3 out and 2 in per ATP, why is this pump described as electrogenic and what is its direct membrane effect?
Channels and Transporters in Biological system
Hard
A.It moves only neutral molecules, affecting only osmolarity
B.It imports one net positive charge, depolarizing the membrane
C.It exports one net positive charge per cycle, contributing a small hyperpolarizing current
D.It moves equal charges, so it has no net electrical effect
Correct Answer: It exports one net positive charge per cycle, contributing a small hyperpolarizing current
Explanation:
3 out minus 2 in yields net export of one positive charge per cycle, generating an outward current that slightly hyperpolarizes the cell; hence the pump is electrogenic.
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50In the alternating-access model, a uniporter (e.g., GLUT1) reaches a maximal transport rate at saturating substrate. The rate-limiting step at saturation is typically:
Channels and Transporters in Biological system
Hard
A.The conformational reorientation of the empty or loaded carrier between outward- and inward-facing states
B.ATP hydrolysis by the uniporter
C.The rate of substrate binding to the outward-facing site
D.Diffusion of substrate in the bulk solution
Correct Answer: The conformational reorientation of the empty or loaded carrier between outward- and inward-facing states
Explanation:
At saturation the binding site is occupied, so flux is limited by how fast the carrier can flip conformation (alternating access), not by binding or diffusion. Uniporters like GLUT1 do not use ATP.
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51Bacteriorhodopsin and channelrhodopsin both contain retinal and absorb light, yet they are functionally distinct. The key difference is:
Ion pumping and Ion Channel rhodopsins and their use
Hard
A.Bacteriorhodopsin is a light-driven pump (active transport), whereas channelrhodopsin is a light-gated passive ion channel
B.Bacteriorhodopsin is a passive channel while channelrhodopsin pumps
C.Both are purely structural proteins with no transport function
D.Both are ATP-dependent pumps but respond to different wavelengths
Correct Answer: Bacteriorhodopsin is a light-driven pump (active transport), whereas channelrhodopsin is a light-gated passive ion channel
Explanation:
Bacteriorhodopsin uses photon energy to move protons uphill (a pump), while channelrhodopsin opens a passive pore letting cations flow down their electrochemical gradient upon illumination.
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52In optogenetics, a neuroscientist wants to silence (hyperpolarize) neurons with light. Which tool and mechanism is appropriate?
Ion pumping and Ion Channel rhodopsins and their use
Hard
A.Halorhodopsin, a light-driven inward pump that hyperpolarizes the membrane
B.Channelrhodopsin-2, a cation channel that depolarizes neurons
C.Bacteriorhodopsin expressed to import
D.A voltage-gated channel activated by light
Correct Answer: Halorhodopsin, a light-driven inward pump that hyperpolarizes the membrane
Explanation:
Halorhodopsin pumps into the cell upon yellow light, making the interior more negative (hyperpolarization) and silencing firing. ChR2 does the opposite (excitation).
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53The photocycle of bacteriorhodopsin involves all-trans to 13-cis retinal isomerization. What is the direct functional role of this isomerization?
Ion pumping and Ion Channel rhodopsins and their use
Hard
A.It permanently opens a channel that never closes
B.It directly synthesizes ATP within the retinal binding pocket
C.It triggers conformational changes that alter the pKa of proton-donor/acceptor residues, driving vectorial proton release and uptake
D.It converts light into heat without any ion movement
Correct Answer: It triggers conformational changes that alter the pKa of proton-donor/acceptor residues, driving vectorial proton release and uptake
Explanation:
Photoisomerization shifts the geometry of the retinal Schiff base and nearby residues, cyclically changing their pKa values so protons are released to one side and taken up from the other, achieving net vectorial pumping.
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54Compared with wild-type channelrhodopsin-2, engineered 'step-function opsins' (e.g., with a C128 mutation) show greatly prolonged open times. The primary optogenetic advantage is:
Ion pumping and Ion Channel rhodopsins and their use
Hard
A.Bistable control—a brief light pulse opens the channel and a second wavelength closes it, enabling sustained depolarization with minimal light
B.Conversion of the channel into an ATP-driven pump
C.Faster millisecond kinetics ideal for high-frequency spiking
D.Complete loss of ion selectivity to conduct all molecules
Correct Answer: Bistable control—a brief light pulse opens the channel and a second wavelength closes it, enabling sustained depolarization with minimal light
Explanation:
Slowing channel closure creates a bistable switch: one pulse turns activity on, another turns it off. This reduces required light exposure and enables prolonged, precise depolarization.
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55A light-driven proton pump moves against a of 2 units plus a membrane potential of 120 mV (inside negative, opposing outward pumping is not relevant here; consider work to move out). Roughly how much energy per proton must the photon supply to overcome the electrochemical gradient at ? (Use mV per pH unit.)
Ion pumping and Ion Channel rhodopsins and their use
Hard
A. meV per proton
B. meV per proton
C. meV per proton
D. meV per proton
Correct Answer: meV per proton
Explanation:
Chemical term: mV equivalent; electrical term: mV; total mV meV per proton. Visible photons ( eV) easily supply this.
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56The '9+2' axoneme generates bending through dynein activity. Sliding of adjacent outer doublets is converted into bending rather than telescoping because:
Cilia and Flagella: Structure and Movement
Hard
A.The plasma membrane physically clamps the tip to prevent extension
B.Dynein arms actively pull the microtubules into curves
C.The central pair rotates and mechanically bends the doublets
D.Nexin links and radial spokes resist and constrain sliding, forcing localized bending
Correct Answer: Nexin links and radial spokes resist and constrain sliding, forcing localized bending
Explanation:
Unrestrained dynein-driven sliding would slide doublets past each other. Nexin (elastic) links and radial spokes constrain sliding, converting it into the bending waveform characteristic of ciliary/flagellar beating.
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57For coordinated bending, dynein arms on opposite sides of the axoneme cannot be simultaneously active. What ensures this asymmetric, switched activity?
Cilia and Flagella: Structure and Movement
Hard
A.The nexin links generate the ATP needed for one side
B.Random thermal fluctuations alone determine which side is active
C.ATP is available only on one side of the axoneme at a time
D.Regulatory signaling via the central pair, radial spokes, and dynein regulatory complex switches dynein activity between doublet sets
Correct Answer: Regulatory signaling via the central pair, radial spokes, and dynein regulatory complex switches dynein activity between doublet sets
Explanation:
The central-pair/radial-spoke system and dynein regulatory complex coordinate which dyneins are active, producing the alternating (switch-point) activity needed for oscillatory bending. Mutations here disrupt motility.
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58A eukaryotic flagellum and a bacterial flagellum both produce motility but are fundamentally different. Which statement correctly contrasts them?
Cilia and Flagella: Structure and Movement
Hard
A.The bacterial flagellum bends via dynein while the eukaryotic one rotates
B.Both use dynein motors and ATP to bend
C.Both are passive structures moved by fluid currents
D.The eukaryotic flagellum bends using ATP-powered dynein on microtubules, while the bacterial flagellum is a rigid helix rotated by a proton-motive-force-driven motor
Correct Answer: The eukaryotic flagellum bends using ATP-powered dynein on microtubules, while the bacterial flagellum is a rigid helix rotated by a proton-motive-force-driven motor
Explanation:
Eukaryotic flagella beat by internal dynein sliding of microtubules (ATP). Bacterial flagella are external rigid helices spun like propellers by a rotary motor powered by the proton-motive force.
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59Intraflagellar transport (IFT) is essential for building and maintaining cilia. Loss of anterograde IFT (kinesin-2 dependent) would most directly cause:
Cilia and Flagella: Structure and Movement
Hard
A.Excessive elongation of cilia beyond normal length
B.Failure to deliver axonemal precursors to the tip, resulting in short or absent cilia
C.Conversion of the cilium into a bacterial-type flagellum
D.Immediate reversal of ciliary beat direction
Correct Answer: Failure to deliver axonemal precursors to the tip, resulting in short or absent cilia
Explanation:
Cilia lack protein synthesis machinery; anterograde IFT (kinesin-2) carries tubulin and axonemal components to the growing tip. Without it, assembly fails and cilia are stunted or absent.
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60Primary cilia (9+0, immotile) differ functionally from motile cilia (9+2). What is the principal role of primary cilia and the structural reason for their immotility?
Cilia and Flagella: Structure and Movement
Hard
A.They pump fluid rapidly using extra dynein arms and a triple central pair
B.They rotate like bacterial flagella using a proton motor
C.They serve as sensory/signaling antennae; they lack the central pair and dynein arms needed for beating
D.They are simply defective motile cilia with no biological function
Correct Answer: They serve as sensory/signaling antennae; they lack the central pair and dynein arms needed for beating
Explanation:
Primary cilia have a 9+0 axoneme lacking the central pair and typically dynein arms, so they cannot beat. Instead they concentrate receptors (e.g., Hedgehog signaling) and act as cellular sensory organelles.
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